2021

Journal articles

  1. Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JTL, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, Zachariah A, Borthakur U, Reddy A, Louis E, Ryder OA, Jhala YV, Petrov D, Excoffier L, Hadly E & and Ramakrishnan U (2021) Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection. Molecular Biology and Evolution 38: 2366-2379 [Abstract and pdf]
  2. Choin J, Mendoza-Revilla J, Arauna LR, Cuadros-Espinoza S, Cassar O, Larena M, Ko AM-S, Harmant C, Laurent R, Verdu P Laval G, Boland A, Olaso R, Deleuze J-F, Valentin F, Ko Y-C, Jakobsson M, Gessain A, Excoffier L, Stoneking M, Patin E & Quintana-Murci L (2021) Genomic insights into population history and biological adaptation in Oceania. Nature 592: 583–589 [Abstract and pdf]
  3. Excoffier L, Marchi N, Marques DA, Matthey-Doret R, Gouy A & Sousa VC (2021) fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics Uncorrected proof [Abstract and pdf]
  4. Foote AD, Gilbert MTP, Gopalakrishnan S, Louis M, Martin MD, Morin PA, Nykänen M, Scharff-Olsen CH & Excoffier L (2021) Evidence of long-term purging of mutation load in killer whale genomes. bioRxiv [Abstract and pdf]
  5. Foote AD, Hooper R, Alexander A, Baird RW, Baker CS, Ballance L, Barlow J, Brownlow A, Collins T, Constantine R, Dalla Rosa L & et al. (2021) Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology Accepted Author Manuscript [Abstract and pdf]
  6. Johri P, Riall K, Becher H, Excoffier L, Charlesworth B & Jensen JD (2021) The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects. Molecular Biology and Evolution 38: 2986-3003 [Abstract and pdf]
  7. Marchi N, Schlichta F & Excoffier L (2021) Demographic inference. Current Biology 31: R267–R281 [Abstract and pdf]
  8. Marques D, Lucek K, Sousa VC, Excoffier L & Seehausen O (2021) Reply to “Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin”. Nature Communications 12: 2807 [Abstract and pdf]
  9. Moinet A, Peischl S & Excoffier L (2021) Strong neutral sweeps occurring during a population contraction. bioRxiv [Abstract]
  10. Yilmaz B, Mooser C, Keller I, Li H, Zimmermann J, Bosshard L, Fuhrer T, Gomez de Agüero M, Trigo NF, Tschanz-Lischer H, Limenitakis JP, Hardt W-D, McCoy KD, Stecher B, Excoffier L, Sauer U, Ganal-Vonarburg SC & Macpherson AJ (2021) Long-term evolution and short-term adaptation of microbiota strains and sub-strains in mice. Cell Host & Microbe 29: 650-663 [Abstract and pdf]

Book sections

  1. Currat M, Quilodran C & Excoffier L (2021) Simulations of Human Dispersal and Genetic Diversity. In 'Evolution of the Human Genome II' edited by Saitou N. Springer Japan KK. Pp. 231-255. [Abstract and pdf]